elpigraph.utils.getPseudotime

elpigraph.utils.getPseudotime(X, PG, source, target=None, nodes_to_include=None, project=True)

Compute pseudotime given source: int

source node

target: int

optional target node

nodes_to_include: list

optional nodes to include in the path (useful for complex topologies with loops, where multiple paths are possible between 2 nodes)

project: bool

if False, will save computation time by using the projection already stored in PG dict (computed using elpigraph.utils.getProjection)